Our research interests revolve around many different subjects relevant to obtaining a better understanding of the interaction of retroviruses with their host cells and organisms. In our laboratory at Tufts University, we are engaged in studies using simple retroviruses (avian and murine viruses) to elucidate the nature of the retrovirus-receptor interaction; the mechanism and specificity of integration of viral DNA into host DNA; control of viral gene expression; mechanism of retroviral genetic variation; and evolution of the host-virus relationship, as revealed by the "fossil" record provided by endogenous proviruses found in the normal DNA of all vertebrates and many other species.

We have also been interested in the complex relationship between HIV and the infected host. Modeling of this interaction implies that virus and infected cells turn over very rapidly, at about one generation per day. Thus, large numbers of cells are infected and die every day, and their progeny viruses go on to infect another cell. This turnover has important implications for drug resistance. Together with the high mutation rate shared by all RNA viruses, it creates the means for accumulation of many viral variants, potentially including drug-resistant variants, even before the onset of drug treatment. Such preexisting mutants would be the principal cause of early treatment failure. The manner in which such mutants are expected to arise is strongly dependent on the structure of the HIV population in infected individuals - its effective size and distribution among different sites of replication. Through the DRP, we are initiating studies to follow in great detail the appearance, change in frequency, and linkage of mutations in virus present in plasma and tissue sites, in both untreated and drug-treated patients. We expect these studies to provide valuable insights into how resistance arises in patients, and possibly to provide clues to averting its appearance.